Columbia Independent School Photo - Columbia Independent School is a JK-12th grade college preparatory school with enrollment of almost 400 students. We look forward to having your child become a CIS Lion!

Top 3 Best Boone County Private High Schools (2025)

For the 2025 school year, there are 9 private high schools serving 8,400 students in Boone County, MO.
The top ranked private high schools in Boone County, MO include Columbia Independent School, Christian Fellowship School, and Mizzou K 12 Online/mu High School.
The average acceptance rate is 90%, which is higher than the Missouri private high school average acceptance rate of 85%.
56% of private high schools in Boone County, MO are religiously affiliated (most commonly Christian and Other).

Top Ranked Boone County Private High Schools (2025)

School
Location
Grades
Students
Christian Fellowship School
Christian Fellowship School Photo - One of our favorite traditions is the elementary Christmas program.
(Christian)
(7)
4600 Christian Fellowship Rd
Columbia, MO 65203
(573) 445-8565
Grades: PK-12
| 478 students
Columbia Independent School
Columbia Independent School Photo - Columbia Independent School is a JK-12th grade college preparatory school with enrollment of almost 400 students. We look forward to having your child become a CIS Lion!
(3)
1801 N Stadium Blvd
Columbia, MO 65202
(573) 777-9250
Grades: PK-12
| 400 students
136 Clark Hall
Columbia, MO 65211
(573) 884-9173
Grades: 6-12
| 6,961 students
Fr Tolton Catholic High School
(Catholic)
3351 E Gans Rd
Columbia, MO 65201
(573) 445-7700
Grades: 9-12
| 252 students
Heritage Academy
Heritage Academy Photo - 2016-2017
Alternative School
2900 Barberry Ave
Columbia, MO 65202
(573) 449-2252
Grades: K-12
| 89 students
High Road School Of Boone County
Special Education School
409 Vandiver Dr Bldg 7
Columbia, MO 65202
(573) 442-2418
Grades: K-12
| 39 students
Mizzou Academy
303 Townsend Hall
Columbia, MO 65211
(855) 256-4975
Grades: 9-12
| n/a students
Shalom Christian Academy
(Christian)
312 Ridgeway Ave
Columbia, MO 65203
(573) 256-4824
Grades: PK-12
| 20 students
Sunnydale Adventist Academy
(Seventh Day Adventist)
(1)
6818 Audrain Road 9139
Centralia, MO 65240
(573) 682-2164
Grades: 9-12
| 161 students

Frequently Asked Questions

What are the top ranked private high schools in Boone County, MO?
The top ranked private high schools in Boone County, MO include Columbia Independent School, Christian Fellowship School, and Mizzou K 12 Online/mu High School.
How many private high schools are located in Boone County?
9 private high schools are located in Boone County.
How diverse are private high schools in Boone County?
Boone County private high schools are approximately 19% minority students, which is lower than the Missouri private school average of 23%.
What percentage of private high schools are religiously affiliated in Boone County?
56% of private high schools in Boone County are religiously affiliated (most commonly Christian and Other).
Which private high schools in Boone County are often viewed compared to one another?

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